PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_70DFD1AE1.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 894aa    MW: 101384 Da    PI: 7.1451
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_70DFD1AE1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1851.1e-26111198190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +gk+++t+++ +HnH+
  Traes_2AS_70DFD1AE1.2 111 EFYNIYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KESKCPRPETRIGCPASMTIRLTPNGKYRLTEFVPNHNHQ 196
                            6********************97766.****************9999.9999************************************ PP

                   FAR1  89 la 90 
                            la
  Traes_2AS_70DFD1AE1.2 197 LA 198
                            97 PP

2FAR1821e-25240326189
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+ YA ++GF+vr+++++ +  ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH 
  Traes_2AS_70DFD1AE1.2 240 EFYSMYAGKIGFNVRRASMTIN-AENVITRRMFVCSKEGFREKKRGA-NRVKKPRPETRTGCPACMVIRLASNGKYNVTEFVTFHNHG 325
                            6*****************9999.5556****************9998.9**************************************9 PP

                   FAR1  89 l 89 
                            l
  Traes_2AS_70DFD1AE1.2 326 L 326
                            8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-24111198IPR004330FAR1 DNA binding domain
PfamPF031019.1E-22240326IPR004330FAR1 DNA binding domain
PfamPF105512.1E-22442536IPR018289MULE transposase domain
PROSITE profilePS5096610.892710757IPR007527Zinc finger, SWIM-type
PfamPF044347.3E-9710756IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-6732759IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MSSNSGGGAK EKGPRIAMPP VPPPLVQNSM PTASDAPTTD LRLAQQSWPG HVVLRPCTSW  60
PPHVNPAYPQ QNGEAVADVV AADVLPVINS CNEKMLPEVN MLFDDENDAY EFYNIYAEKV  120
GFFVRRSTLW TTSKNIITRR TFVCSREGFR EKKKGAKESK CPRPETRIGC PASMTIRLTP  180
NGKYRLTEFV PNHNHQLATA STIHMLKAKK IRRKARAVRE NLVDDTVVTP EFENEDEAYE  240
FYSMYAGKIG FNVRRASMTI NAENVITRRM FVCSKEGFRE KKRGANRVKK PRPETRTGCP  300
ACMVIRLASN GKYNVTEFVT FHNHGLGAAA ASDLVMTSLA AGSYQDCGVD LYDESLDDCY  360
GKQNLIKEDA TSNCLEGRSW KRYKCKVPHY GDVGATLEYL QKMQHDNPSF FYAVKSDEDG  420
NLTNFLWADS KSIMDFTHFG DVVCLDSGYA VQGYGRPIAL FTGLNHHRQT VIFGTALLYD  480
ESFEAFRWLL DTFKMAMNST HPKTLLTDRS AVISEAVAVS WPETAHRFCV WQIYQNALQQ  540
LSQAFHGSRT LEYNFKRCLF DCEDEAEFLM AWREMLENHD LKDNQWLADL LAVKEKWALP  600
YGREAFYADM KSVQQKDNLS SELKIYLSLE FDLLSFFVQF EKLLCDRRSA ELQLDVSASQ  660
STKKPPSMRI LRQAANVYTP AAYRMFEREF ELYMDCMLYN CGEMGTICEY RITVEDNPKD  720
HFVKYDSLNS MSHCSCKRFE FVGIPCRHML KVLDTRNIKD IPPQYILKRW RKDARSGSSN  780
GGYAYSFDGD PQTKRHTLLC RIFSIAAARA ATSAESFAYM ESQSSILMGQ VEQFLENSPP  840
DIAAIIGANC DRTQIPVESM ITDGLHNHAN FINGSADDSL TFPFTMGAGT LDYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766160.0AK376616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753080.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5B2980.0W5B298_WHEAT; Uncharacterized protein
STRINGMLOC_76708.60.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]